• PMOD Neuro Tool Introduction (PNEURO)
• Brain VOI Tools: Common Features
  • User Interface
  • Saving Intermediate Results
  • Protocols
  • Run All
  • Quality Control Capture
  • Batch Mode
    • Batch Mode Maximum Probability Atlas & Brain Parcellation (Brain VOIs)
    • Batch Mode Brain Norm Deviation
  • Atlas Selection
  • Tree Organization of Atlas VOIs
  • Recommendations for Brain VOI Calculations
  • Partial-Volume Correction (PVC)
    • Rousset VOI-based GTM Method
    • LMA modified GTM Method
    • Region-based Voxelwise Method
    • Muller-Gartner Method (Grey Matter Spill-out and White Matter Spill-in)
    • Brain Spill-out (Muller-Gartner)
    • Fast VOI-based GTM method
  • 3D Rendering of Brain VOIs
• Atlas Methodology
  • Structure of VOI Atlases in PMOD
  • N30R83 Maximum Probability Atlas
    • N30R83 Brain Structures
  • AAL Single-Subject Atlas
    • AAL-VOIs Atlas
    • AAL-Merged Atlas
  • Amyloid Cortical Composite Atlas
  • Centiloid Atlas
  • Cynomolgus Monkey Atlas
  • Rhesus Macaque (INIA19)
  • Domestic Pig / Minipig Brain Atlas (CH.Malbert)
• Brain VOIs Based on Maximum Probability Atlas
  • Maximum Probability Atlas Implementation in PNEURO
  • Workflow for Studies with PET and MRI
    • PET Image Loading and Time Averaging
    • MR Image Loading and Segmentation
    • PET to MR Matching
    • MR-based Normalization
    • Brain Segments Calculation
    • Outlining of Brain Structures
    • Brain VOI Editing and Statistics Calculation
  • Workflow for Functional and Anatomical PET
    • Functional PET Image Loading and Time Averaging
    • Anatomical PET Image Loading and PET-PET Matching
    • PET-based Normalization
    • Brain Segments Calculation
    • Outlining of Brain Structures
    • Brain VOI Editing and Statistics Calculation
  • Workflow for PET-only Studies
    • PET Image Loading and Time Averaging
    • PET-based Normalization
    • Brain Segments Calculation
    • Outlining of Brain Structures
    • Brain VOI Editing and Statistics Calculation
  • Workflow for MR-only Studies
    • MR Loading Configuration
    • MR Image Loading and Segmentation
    • MR-based Normalization
    • Brain Segments Calculation
    • Outlining of Brain Structures
    • Brain VOI Editing and Statistics Calculation
• Brain VOIs Based on T1-MRI Database
  • Methodology
    • Brain Parcellation
    • Brain Structures
  • Brain Parcellation Implementation in PNEURO
  • Workflow for Studies with PET and MR
    • PET Image Loading and Time Averaging
    • MR Image Loading and Segmentation
    • Landmark Definition and Parcellation
    • Parcellation Result and Matching with PET
    • Outlining of Brain Structures
    • Brain VOI Editing and Statistics Calculation
  • Workflow for MR-only Studies
    • MR Image Loading and Denoising
    • Landmark Definition and MR Segmentation
    • Parcellation Result and Outlining of Brain Structures
    • Brain VOI Editing and Statistics Calculation
• Parametric Mapping
• Results
  • Statistics of Dynamic PET Data
  • Statistics of Static Data
• Brain Norm Deviation Functionality
  • Brain Norm Creation
    • Brain Norm Editor
    • 1. Empty Brain Norm Creation
    • 2. Control Samples Addition
    • 3. Normalization Definition and Sample Normalization
    • 4. Calculation of Normal Pattern
    • 5. Variance Definition for z-Score Calculation
    • 6. Comparison Settings
    • 7. Result Mask Specification
    • 8. Brain Norm Saving
  • Sharing Databases
  • Compare to Norm Patient Data Analysis
    • PET Image Loading
    • Template-based Normalization
    • Quality Control of Normalization
    • Z-Score Analysis
    • VOI Analysis
    • Application Notes
    • Example Database
• References
• PMOD Disclaimer
• PMOD Copyright Notice